Ruan, Yijun : rechercher sur Z-Library

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1

Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions

Li, Xingwang, Luo, Oscar Junhong, Wang, Ping, Zheng, Meizhen, Wang, Danjuan, Piecuch, Emaly, Zhu, Jacqueline Jufen, Tian, Simon Zhongyuan, Tang, Zhonghui, Li, Guoliang, Ruan, Yijun

Journal:

Nature Protocols

Année:

2017

Langue:

english

Fichier:

PDF, 1017 KB

english, 2017

2

pyBedGraph: a python package for fast operations on 1D genomic signal tracks

Zhang, Henry B, Kim, Minji, Chuang, Jeffrey H, Ruan, Yijun, Valencia, Alfonso

Journal:

Année:

2020

Fichier:

PDF, 959 KB

2020

3

Chromatin interaction networks and higher order architectures of eukaryotic genomes

Kuljeet Singh Sandhu, Guoliang Li, Wing-Kin Sung, Yijun Ruan

Journal:

Journal of Cellular Biochemistry

Année:

2011

Langue:

english

Fichier:

PDF, 159 KB

english, 2011

4

TowardsArabidopsisgenome analysis: monitoring expression profiles of 1400 genes using cDNA microarrays

Yijun Ruan, James Gilmore, Timothy Conner

Journal:

The Plant Journal

Année:

1998

Langue:

english

Fichier:

PDF, 709 KB

english, 1998

5

Detecting abnormalities of corpus callosum connectivity in autism using magnetic resonance imaging and diffusion tensor tractography

Shanshan Hong, Xiaoyan Ke, Tianyu Tang, Yueyue Hang, Kangkang Chu, Haiqing Huang, Zongcai Ruan, Zuhong Lu, Guotai Tao, Yijun Liu

Journal:

Psychiatry Research: Neuroimaging

Année:

2011

Langue:

english

Fichier:

PDF, 403 KB

english, 2011

6

Interrogating the transcriptome

Yijun Ruan, Pierre Le Ber, Huck Hui Ng, Edison T. Liu

Journal:

Trends in Biotechnology

Année:

2004

Langue:

english

Fichier:

PDF, 294 KB

english, 2004

7

ChIA-PET analysis of transcriptional chromatin interactions

Jingyao Zhang, Huay Mei Poh, Su Qin Peh, Yee Yen Sia, Guoliang Li, Fabianus Hendriyan Mulawadi, Yufen Goh, Melissa J. Fullwood, Wing-Kin Sung, Xiaoan Ruan, Yijun Ruan

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2012

8

Bifurcation analysis in a predator-prey model with constant-yield predator harvesting

Huang, Jicai, Gong, Yijun, Ruan, Shigui

Journal:

Discrete and Continuous Dynamical Systems - Series B

Année:

2013

Langue:

english

Fichier:

PDF, 2.88 MB

english, 2013

9

Integrative model of genomic factors for determining binding site selection by estrogen receptor-α

Joseph, Roy, Orlov, Yuriy L, Huss, Mikael, Sun, Wenjie, Li Kong, Say, Ukil, Leena, Fu Pan, You, Li, Guoliang, Lim, Michael, Thomsen, Jane S, Ruan, Yijun, Clarke, Neil D, Prabhakar, Shyam, Cheung, Edwi

Journal:

Molecular Systems Biology

Année:

2010

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2010

10

Prevention and Control of Zika as a Mosquito-Borne and Sexually Transmitted Disease: A Mathematical Modeling Analysis

Gao, Daozhou, Lou, Yijun, He, Daihai, Porco, Travis C., Kuang, Yang, Chowell, Gerardo, Ruan, Shigui

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2016

11

Digestion-ligation-only Hi-C is an efficient and cost-effective method for chromosome conformation capture

Lin, Da, Hong, Ping, Zhang, Siheng, Xu, Weize, Jamal, Muhammad, Yan, Keji, Lei, Yingying, Li, Liang, Ruan, Yijun, Fu, Zhen F., Li, Guoliang, Cao, Gang

Journal:

Nature Genetics

Année:

2018

Langue:

english

Fichier:

PDF, 2.86 MB

english, 2018

12

ChIP-based methods for the identification of long-range chromatin interactions

Melissa J. Fullwood, Yijun Ruan

Journal:

Journal of Cellular Biochemistry

Année:

2009

Langue:

english

Fichier:

PDF, 471 KB

english, 2009

13

Mutational dynamics of the SARS coronavirus in cell culture and human populations isolated in 2003

Vinsensius B Vega, Yijun Ruan, Jianjun Liu, Wah Heng Lee, Lin Chia Wei, Su Yun Se-Thoe, Kin Fai Tang, Tao Zhang, Prasanna R Kolatkar, Eng Eong Ooi, Ai Ee Ling, Lawrence W Stanton, Philip M Long, Ediso

Journal:

BMC Infectious Diseases

Année:

2004

Langue:

english

Fichier:

PDF, 631 KB

english, 2004

14

Multiplex parallel pair-end-ditag sequencing approaches in system biology

Yijun Ruan, Chia-Lin Wei

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Année:

2010

Langue:

english

Fichier:

PDF, 470 KB

english, 2010

15

In vitro transcription from theNectria haematococca PDA1 promoter in an homologous extract reflects in vivo pisatin-responsive regulation

Yijun Ruan, David C. Straney

Journal:

Current Genetics

Année:

1994

Langue:

english

Fichier:

PDF, 1.41 MB

english, 1994

16

In vitro transcription and binding analysis of promoter regulation by a host-specific signal in a phytopathogenic fungus

David Straney, Yijun Ruan, Jie He

Journal:

Antonie van Leeuwenhoek

Année:

1994

Langue:

english

Fichier:

PDF, 668 KB

english, 1994

17

Identification of elements in thePDA1promoter ofNectria haematococcanecessary for a high level of transcription in vitro

Yijun Ruan, David C. Straney

Journal:

Molecular Genetics and Genomics

Année:

1996

Langue:

english

Fichier:

PDF, 1.85 MB

english, 1996

18

Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness

Axel M. Hillmer, Jan Freudenberg, Sean Myles, Stefan Herms, Kun Tang, David A. Hughes, Felix F. Brockschmidt, Yijun Ruan, Mark Stoneking, Markus M. Nöthen

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 995 KB

english, 2009

19

Two-stage designs to identify the effects of SNP combinations on complex diseases

Guolian Kang, Weihua Yue, Jifeng Zhang, Marianne Huebner, Handi Zhang, Yan Ruan, Tianlan Lu, Yansu Ling, Yijun Zuo, Dai Zhang

Journal:

Journal of Human Genetics

Année:

2008

Langue:

english

Fichier:

PDF, 255 KB

english, 2008

20

Metagenomic analysis of viruses in reclaimed water

Karyna Rosario, Christina Nilsson, Yan Wei Lim, Yijun Ruan, Mya Breitbart

Journal:

Environmental Microbiology

Année:

2009

Langue:

english

Fichier:

PDF, 686 KB

english, 2009

21

Determination of transcription factor binding

Cheung, Edwin, Ruan, Yijun

Journal:

Nature Genetics

Année:

2011

Langue:

english

Fichier:

PDF, 372 KB

english, 2011

22

White matter impairments in autism, evidence from voxel-based morphometry and diffusion tensor imaging

Xiaoyan Ke, Tianyu Tang, Shanshan Hong, Yueyue Hang, Bing Zou, Huiguo Li, Zhenyu Zhou, Zongcai Ruan, Zuhong Lu, Guotai Tao, Yijun Liu

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 649 KB

english, 2009

23

PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data

Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Pramila Ariyaratne, Hong Sain Ooi, Chia-Lin Wei, Wing-Kin Ken Sung, Yijun Ruan

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 2.48 MB

english, 2006

24

Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes

KuoPing Chiu, Pramila Ariyaratne, Han Xu, Adrian Tan, Patrick Ng, Edison Tak-Bun Liu, Yijun Ruan, Chia-Lin Wei, Wing-Kin Ken Sung

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 619 KB

english, 2007

25

Whole-Genome Mapping of Histone H3 Lys4 and 27 Trimethylations Reveals Distinct Genomic Compartments in Human Embryonic Stem Cells

Xiao Dong Zhao, Xu Han, Joon Lin Chew, Jun Liu, Kuo Ping Chiu, Andre Choo, Yuriy L. Orlov, Wing-Kin Sung, Atif Shahab, Vladimir A. Kuznetsov, Guillaume Bourque, Steve Oh, Yijun Ruan, Huck-Hui Ng, Chia

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2007

26

Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection

Yijun Ruan, Chia Lin Wei, Ai Ee Ling, Vinsensius B Vega, Herve Thoreau, Su Yun Se Thoe, Jer-Ming Chia, Patrick Ng, Kuo Ping Chiu, Landri Lim, Tao Zhang, Kwai Peng Chan, Lynette Oon Lin Ean, Mah Lee Ng

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 146 KB

english, 2003

27

Tackling the epigenome in the pluripotent stem cells

Xiaodong Zhao, Yijun Ruan, Chia-Lin Wei

Journal:

Journal of Genetics and Genomics

Année:

2008

Langue:

english

Fichier:

PDF, 505 KB

english, 2008

28

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

Jing-Quan Lim, Chandana Tennakoon, Guoliang Li, Eleanor Wong, Yijun Ruan, Chia-Lin Wei, Wing-Kin Sung

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2012

29

Path-preference cellular-automaton model for traffic flow through transit points and its application to the transcription process in human cells

Ohta, Yoshihiro, Nishiyama, Akinobu, Wada, Yoichiro, Ruan, Yijun, Kodama, Tatsuhiko, Tsuboi, Takashi, Tokihiro, Tetsuji, Ihara, Sigeo

Journal:

Physical Review E

Année:

2012

Langue:

english

Fichier:

PDF, 9.45 MB

english, 2012

30

Systematic evaluation of factors influencing ChIP-seq fidelity

Chen, Yiwen, Negre, Nicolas, Li, Qunhua, Mieczkowska, Joanna O, Slattery, Matthew, Liu, Tao, Zhang, Yong, Kim, Tae-Kyung, He, Housheng Hansen, Zieba, Jennifer, Ruan, Yijun, Bickel, Peter J, Myers, Ric

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 977 KB

english, 2012

31

DNase I–hypersensitive exons colocalize with promoters and distal regulatory elements

Mercer, Tim R, Edwards, Stacey L, Clark, Michael B, Neph, Shane J, Wang, Hao, Stergachis, Andrew B, John, Sam, Sandstrom, Richard, Li, Guoliang, Sandhu, Kuljeet S, Ruan, Yijun, Nielsen, Lars K, Mattic

Journal:

Nature Genetics

Année:

2013

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2013

32

A novel nanoscale catalyst system composed of nanosized Pd catalysts immobilized on Fe 3 O 4 @SiO 2 –PAMAM

Jiang, Yijun, Jiang, Jinhua, Gao, Qiuming, Ruan, Meiling, Yu, Himei, Qi, Lingjun

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 723 KB

english, 2008

33

Activation of cyclic AMP/PKA pathway inhibits bladder cancer cell invasion by targeting MAP4-dependent microtubule dynamics

Ou, Yanqiu, Zheng, Xiaoke, Gao, Yixing, Shu, Minfeng, Leng, Tiandong, Li, Yan, Yin, Wei, Zhu, Wenbo, Huang, Yijun, Zhou, Yuxi, Tang, Jianjun, Qiu, Pengxin, Yan, Guangmei, Hu, Jun, Ruan, Huaizhen, Hu,

Journal:

Urologic Oncology: Seminars and Original Investigations

Année:

2014

Langue:

english

Fichier:

PDF, 4.63 MB

english, 2014

34

PCR-based construction of promoter/G-free templates for in vitro transcription analysis allows selection of plasmids with optimal activity in homologous extracts

Ruan, Yijun, Straney, David C.

Journal:

Année:

1994

Langue:

english

Fichier:

PDF, 731 KB

english, 1994

35

[IEEE IWAT 2005. IEEE International Workshop on Antenna Technology: Small Antennas and Novel Metamaterials, 2005. - Singapore (March 7-9, 2005)] IWAT 2005. IEEE International Workshop on Antenna Technology: Small Antennas and Novel Metamaterials, 2005. - Design and realization of miniature broadband loaded monopole

Zhao Xing,, Ruan Chengli,, Sun Yijun,, Wang Wei,

Année:

2005

Langue:

english

Fichier:

PDF, 348 KB

english, 2005

36

Deciphering the Regulatory Logic of an Ancient, Ultraconserved Nuclear Receptor Enhancer Module

Bagamasbad, Pia D., Bonett, Ronald M., Sachs, Laurent, Buisine, Nicolas, Raj, Samhitha, Knoedler, Joseph R., Kyono, Yasuhiro, Ruan, Yijun, Ruan, Xiaoan, Denver, Robert J.

Journal:

Molecular Endocrinology

Année:

2015

Langue:

english

Fichier:

PDF, 2.08 MB

english, 2015

37

Transcriptional profiles of bovine in vivo pre-implantation development

Jiang, Zongliang, Sun, Jiangwen, Dong, Hong, Luo, Oscar, Zheng, Xinbao, Obergfell, Craig, Tang, Yong, Bi, Jinbo, O’Neill, Rachel, Ruan, Yijun, Chen, Jingbo, Tian, Xiuchun

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.63 MB

english, 2014

38

Transcriptome Analysis of Zebrafish Embryogenesis Using Microarrays

Mathavan, Sinnakaruppan, Lee, Serene G. P., Mak, Alicia, Miller, Lance D., Murthy, Karuturi Radha Krishna, Govindarajan, Kunde R., Tong, Yan, Wu, Yi Lian, Lam, Siew Hong, Yang, Henry, Ruan, Yijun, Kor

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2005

39

RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses

Zhang, Tao, Breitbart, Mya, Lee, Wah Heng, Run, Jin-Quan, Wei, Chia Lin, Soh, Shirlena Wee Ling, Hibberd, Martin L., Liu, Edison T., Rohwer, Forest, Ruan, Yijun

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 417 KB

english, 2006

40

SARS Transmission Pattern in Singapore Reassessed by Viral Sequence Variation Analysis

Liu, Jianjun, Lim, Siew Lan, Ruan, Yijun, Ling, Ai Ee, Ng, Lisa F. P., Drosten, Christian, Liu, Edison T., Stanton, Lawrence W., Hibberd, Martin L.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 2.77 MB

english, 2005

41

Laboratory-Acquired Severe Acute Respiratory Syndrome

Lim, Poh Lian, Kurup, Asok, Gopalakrishna, Gowri, Chan, Kwai Peng, Wong, Christopher W., Ng, Lee Ching, Se-Thoe, Su Yun, Oon, Lynette, Bai, Xinlai, Stanton, Lawrence W., Ruan, Yijun, Miller, Lance D.,

Journal:

Boston Medical and Surgical Journal

Année:

2004

Langue:

english

Fichier:

PDF, 133 KB

english, 2004

42

Genome-wide analysis reveals methyl-CpG–binding protein 2–dependent regulation of microRNAs in a mouse model of Rett syndrome

Hao Wu, Jifang Tao, Pauline J. Chen, Atif Shahab, Weihong Ge, Ronald P. Hart, Xiaoan Ruan, Yijun Ruan, Yi E. Sun and Thomas C. Südhof

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2010

43

Study on 41Ca-AMS for diagnosis and assessment of cancer bone metastasis in rats

Shen, Hongtao, Pang, Fangfang, Jiang, Shan, He, Ming, Dong, Kejun, Dou, Liang, Pang, Yijun, Yang, Xianlin, Ruan, Xiangdong, Liu, Manjun, Xia, Chunbo

Journal:

Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms

Année:

2015

Langue:

english

Fichier:

PDF, 742 KB

english, 2015

44

Glucocorticoid receptor and nuclear factor kappa-b affect three-dimensional chromatin organization

Kuznetsova, Tatyana, Wang, Shuang-Yin, Rao, Nagesha A., Mandoli, Amit, Martens, Joost H. A., Rother, Nils, Aartse, Aafke, Groh, Laszlo, Janssen-Megens, Eva M., Li, Guoliang, Ruan, Yijun, Logie, Colin,

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2015

45

3D-GNOME: an integrated web service for structural modeling of the 3D genome

Szalaj, Przemyslaw, Michalski, Paul J., Wróblewski, Przemysław, Tang, Zhonghui, Kadlof, Michal, Mazzocco, Giovanni, Ruan, Yijun, Plewczynski, Dariusz

Journal:

Nucleic Acids Research

Année:

2016

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2016

46

Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application

Li, Guoliang, Cai, Liuyang, Chang, Huidan, Hong, Ping, Zhou, Qiangwei, Kulakova, Ekaterina V, Kolchanov, Nikolay A, Ruan, Yijun

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.01 MB

english, 2014

47

Voxel-based morphometry study on brain structure in children with high-functioning autism

Ke, Xiaoyan, Hong, Shanshan, Tang, Tianyu, Zou, Bing, Li, Huiguo, Hang, Yueyue, Zhou, Zhenyu, Ruan, Zongcai, Lu, Zuhong, Tao, Guotai, Liu, Yijun

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 144 KB

english, 2008

48

The transfer of seasonal isotopic variability between precipitation and drip water at eight caves in the monsoon regions of China

Duan, Wuhui, Ruan, Jiaoyang, Luo, Weijun, Li, Tingyong, Tian, Lijun, Zeng, Guangneng, Zhang, Dezhong, Bai, Yijun, Li, Jilong, Tao, Tao, Zhang, Pingzhong, Baker, Andy, Tan, Ming

Journal:

Geochimica et Cosmochimica Acta

Année:

2016

Langue:

english

Fichier:

PDF, 2.90 MB

english, 2016

49

SPIE Proceedings [SPIE Aerospace/Defense Sensing and Controls - Orlando, FL (Monday 13 April 1998)] Modeling and Simulating Sensory Response for Real and Virtual Environments - Fiber optic sliding sensor model and its simulation

Yuan, Libo, Illgen, John D., Trier, Edwin A., Liang, Yijun, Lin, Xiaoyan, Xu, Yande, Ruan, Shunling

Année:

1998

Langue:

english

Fichier:

PDF, 335 KB

english, 1998

50

Liquid-type AgInS2/ZnS quantum dot-based warm white light-emitting diodes

Lu, Min, Bai, Xue, Lin, Yijun, Ji, Changyin, Wu, Hua, Ruan, Cheng, Gao, Wenzhu, Wang, Yiding, Du, Qiaoling

Journal:

Chemical Physics Letters

Année:

2016

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2016